rs386873441 SNP Detail

Summary

• ID
  rs386873441
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  138
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:32247897 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCTCT CTCTCTCTCT CTCTCTGTCT
  S
  TCTCTCTCTC TCTCTTTCTT CCATT                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CZECHII/EiJ	LG/J	LP/J	MOLF/EiJ	NON/ShiLtJ	NZB/BlNJ	QSi3/Ianm	SEA/GnJ	SPRET/EiJ	SWR/J
ss920820273	MGP_WTSI_11_32297897	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CZECHII/EiJ	LG/J	LP/J	MOLF/EiJ	NON/ShiLtJ	NZB/BlNJ	QSi3/Ianm	SEA/GnJ	SPRET/EiJ	SWR/J
rs386873441					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss920820273	MGP_WTSI_11_32297897	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:32247897 () rs orientation: forward

Symbol	Name	Function Class
Gm73808	predicted gene, 73808	1931 bp downstream
Gm74521	predicted gene, 74521	591 bp upstream
Hba-a2	hemoglobin alpha, adult chain 2	599 bp downstream
Rr444569	regulatory region 444569	1398 bp distal
Rr444570	regulatory region 444570	101 bp distal
Rr444571	regulatory region 444571	1169 bp proximal
Rr444572	regulatory region 444572	1682 bp proximal
Tssr100842	transcription start site region 100842	1405 bp downstream
Tssr100843	transcription start site region 100843	738 bp downstream
Tssr100844	transcription start site region 100844	333 bp downstream