rs38687760 SNP Detail

Summary

• ID
  rs38687760
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:61230992 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCAGTTTTT AATTATTGGA
  ATTTTTGGTT GAATCTCTAG CTTTCAGTGG GATAGAATTG ATATGTTTGG CAAAACTAAA
  CTTGCCAGTC CACGGGCATG GTCTGTATCT CAGTACTTAG ATCTATCTTC TTCAGTGTTT
  TGTATTCTCT ATACAGATTT CACACACAGT CCAGTCTGTG TACACTTCAT GTGTCCCCAG
  W
  GCTGTTAGAA ACAGCCTCTT CTGACCAGAG GTGGGGACTC TTGCTATAGC GTACATTTCT
  GTCCCTTGCC GTGAACTCAG GAAACTTATT TTACTTCTAA AAATAAATGA ATATATTCAC
  ACATAAGTAA AAACAGTATT TTTCTAAAAA TAAATACTAG GGCTCTTACT CTTTCTGTCT
  ATACAACCTC TTGTGGCCTA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50414444	NES13454316	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	A	A	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38687760					SNP	T	T	T	T	T	T	T	T	T	A	A	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50414444	NES13454316	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:61230992 () rs orientation: forward

Symbol	Name	Function Class
Tssr151399	transcription start site region 151399	1256 bp downstream
Tssr151400	transcription start site region 151400	1225 bp downstream
Tssr151401	transcription start site region 151401	1202 bp downstream
Tssr151402	transcription start site region 151402	1120 bp downstream
Tssr151403	transcription start site region 151403	1102 bp downstream
Tssr151404	transcription start site region 151404	1556 bp upstream