rs38688071 SNP Detail

Summary

• ID
  rs38688071
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:33191550 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCTATTACA GCATTCCCAA
  CAGTCTCTAG ACATGGTGGT GAGCACTTCC TAAAGGAAGG CAGCTGGACA GACCATGGCT
  GAAAGACCTA GGCCTACATG AGAATTAAAA TATCTGACAC CAGCATCACG TGGGGAATGA
  GCAAGATATG CCCTACCCAT GGAGACCTGG ACTTGACCTT CTGCTCTGAC TGCGCTGTGG
  Y
  CTGAAAGTCT CCGGGCTTCT GCTCCCTGTC ATAGGCCTGT GCTCAGGGCC TGCTCCTTGA
  CAGAGTGTGG AGCAGGCATG AGGGAAAGGT GTCAGGAGGT GCTGGCCACT GGGTAGCAGC
  TGCCTCCTGC ATCCCAGCAA AAGCCCTTCT CACCAGTGAT GGTGTCGTCT CAGCACAGGG
  CTGGTGTGAA AGAAGGCTAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50968067	NES14414655	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38688071					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50968067	NES14414655	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:33191550 () rs orientation: forward

Symbol	Name	Function Class
F730043M19Rik	RIKEN cDNA F730043M19 gene	within coordinates
Gm16267	predicted gene 16267	1912 bp downstream