rs38688268 SNP Detail

Summary

• ID
  rs38688268
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:42110991 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACAGATATTT ACATTATGAT
  TTATAACAGT AGCAAAATTA GTTTTGAAAT ATGAACAAAG TAATTTGTTG GGGGTCACCA
  CAACATGAGT AGAACTGTAT TAAAGAGTCG CAGCATTAGG AAAGTTGAGA GCCACTGGTT
  TAGATGCAAA TTTAGGAGAG GTTGGCTTTT ATCCATGGCC ATCAGAGGGC AGTCCTGCCG
  W
  ATAGGATCAT CACTGTTCCT GGGGGATGGG GGTTGGCAAG GAGAGGGTCG TGCTAATGAG
  CACATAGTCT GGAATAATGG GAAGAGCTCT TACTCCTGTG TCATCAGATC TAATATATTC
  TGCATCAGAA ACTCAACAAA ACAAAAACAA AAACAAATTT AAATGCTTGT AGGAAAACCT
  ACATTAGATC CTCTCACATC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	KK/HlJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
ss50819841	NES13535558	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	A	A	T
SNP Consensus Information
SNP					Consensus Type	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	KK/HlJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
rs38688268					SNP	T	T	T	T	T	A	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50819841	NES13535558	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:42110991 () rs orientation: forward

Symbol	Name	Function Class
Avpi1	arginine vasopressin-induced 1	723 bp downstream
Pi4k2a	phosphatidylinositol 4-kinase type 2 alpha	465 bp downstream
Rr547821	regulatory region 547821	1769 bp distal
Rr547822	regulatory region 547822	5 bp distal