rs38688694 SNP Detail

Summary

• ID
  rs38688694
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  126
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:7665837 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CCTATAATCT TTGAGAACTG ATTTGTAGTT TGTATAAATT
  CTTGGAACAT CTCTTGTTTA TTTTTGGATG CCAAAGCTGT TCTGACCAGG ATAAAATGCC
  W
  AGGTTAGGTC CATGCATCCT GGGTTTCACC TTGTGGTTGC TGGTTGCCAA GGTAGCAGAG
  CAGGCGTCAC CTGTTGCTAT GGTGCTGCTC TACCTTGCAG                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	DBA/2J	FVB/NJ	KK/HlJ	PWD/PhJ	WSB/EiJ
ss51189960	NES14316953	PERLEGEN	MM_PANEL2	f	SNP	A	T	A	T	A	A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	DBA/2J	FVB/NJ	KK/HlJ	PWD/PhJ	WSB/EiJ
rs38688694					SNP	A	T	A	T	A	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51189960	NES14316953	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:7665837 () rs orientation: forward

Symbol	Name	Function Class
Nek10	NIMA (never in mitosis gene a)- related kinase 10	within coordinates
Rr290587	regulatory region 290587	1037 bp distal
Tssr124320	transcription start site region 124320	207 bp upstream