rs38689322 SNP Detail

Summary

• ID
  rs38689322
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  126
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:68291502 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GTGAAGGCAT TGGGAAATAT TTCAAATATT CAGACATCCT
  TGAACTAAAG CACTAAATAT TAATTATGTA AGTTCTTCCA GCTGGAATAC CTTTGGTTTT
  M
  TTTAGGTATT GAGAGTATAG TGTAATATAG TATGGCTTCT GACTTATCAA TTGGTGCCAC
  ATTACAAAAA AAGTCTGTCC CACTTCATAA GAGATTTTTT                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss50462222	NES13447163	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	A	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs38689322					SNP	C	C	C	C	C	C	C	C	A	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50462222	NES13447163	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:68291502 () rs orientation: forward

Symbol	Name	Function Class
Ldlrad4	low density lipoprotein receptor class A domain containing 4	within coordinates
Rr393849	regulatory region 393849	49 bp downstream
Rr540015	regulatory region 540015	403 bp distal
Rr540016	regulatory region 540016	1408 bp proximal
Tssr151775	transcription start site region 151775	1755 bp upstream