rs38689673 SNP Detail

Summary

• ID
  rs38689673
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:65737383 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGTGTGTGT GAATGAAAAC
  TGACTCTTCA AAGTTTGCTT AAGCTAGGGT ACTTTATACT AATTAATTGA GAACAACTTA
  AATTTGATTA CTTCTACACA TTTTGCCAGC ATATTGAATG TATAAATAAT GTGTATACAT
  ATAGATAAAT ATCGATGTAT ATAGTACTTT ACATATATGT AGATACTGTA AATAGATTTT
  W
  AAAATGCAGT AGACTCCTTT TTAAAAGAAA GGTCAAGTTA ATAGCGTTTA GAATTCTTGG
  GGAAATCAGA TGAAAATATC TTCCCAGTTT CTATCTCCTT GATGTCCTAG ACATGAAGTG
  TATATGCCTG CAATATTAAT GAACCACGTG CCTCATACAG GCACAGGGCT AGGAGGCAGC
  AGGCCTCCAC CACTTCAGAG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50963768	NES13941824	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	T	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38689673					SNP	A	A	A	A	T	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50963768	NES13941824	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:65737383 () rs orientation: forward

Symbol	Name	Function Class
Gm37359	predicted gene, 37359	within coordinates
Lekr1	leucine, glutamate and lysine rich 1	Intron
Rr577737	regulatory region 577737	1678 bp distal
Rr577738	regulatory region 577738	281 bp distal