rs386908044 SNP Detail

Summary

• ID
  rs386908044
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  138
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:90078362 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTCTC TCTCTCTCTC TCTCTCTCTC
  Y
  CTCCTCATTC CCTCTCCATC TCCCT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	BUB/BnJ	C3H/HeJ	C57BL/6J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss921008954	MGP_WTSI_11_90187536	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	BUB/BnJ	C3H/HeJ	C57BL/6J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs386908044					SNP	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss921008954	MGP_WTSI_11_90187536	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:90078362 () rs orientation: forward

Symbol	Name	Function Class
Gm45883	predicted gene 45883	572 bp upstream
Smim36	small integral membrane protein 36	147 bp upstream
Tssr104108	transcription start site region 104108	122 bp upstream
Tssr104109	transcription start site region 104109	165 bp upstream