rs38690886 SNP Detail

Summary

• ID
  rs38690886
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:85810056 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCCTAGGAG CCGGTCAATC
  CTGTTGAACA AACATTTAGA GAAGCCTTTC CTAGCAACCC TAAACTTCAC TTATCTCTAA
  GAGGTCTGGT TAGTATACTA CCTATCTTTG AGGCATTTTG GATGCAGAAT GCTCATAGTT
  AAATTCTACT TTGTGTGAGT TAATGTCTTC TAAGCAGATT TTTTTCATAA ATTCTATTCT
  Y
  GTGTCTTCTC CATCACCATG TGACTCAGTC CTCTTTCACT GAAATGAGCC ATCTTGTCAT
  TATTGTGTAC ATTGGACACT GTCTTTATGT AGCCATCTAT CCTACAGCCA GATCCATAAT
  TGTTGTGAGT CTCAGATTCT TTTGTAAACT GGAGACAAAA CTGGCCAAGG CAAAAGAAGG
  GGAGGAGAGT TAAGTAATTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NZW/LacJ	WSB/EiJ
ss51034531	NES14384609	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NZW/LacJ	WSB/EiJ
rs38690886					SNP	T	T	T	T	T	T	C	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51034531	NES14384609	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:85810056 () rs orientation: forward

Symbol	Name	Function Class
Flvcr2	feline leukemia virus subgroup C cellular receptor 2	within coordinates
Rr261860	regulatory region 261860	656 bp distal
Rr261861	regulatory region 261861	within coordinates
Rr268751	regulatory region 268751	1746 bp proximal