rs38692971 SNP Detail

Summary

• ID
  rs38692971
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:127543367 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCCCA TCTGCTCCTG CAGGCAAGAG
  S
  ATTGTTAGGT TTCAGGAAAC TCCCC                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50947119	NES14150404	PERLEGEN	MM_PANEL2	f	SNP	C		C	C	C	G	C	G	G	G	G	G	G	G	C	C
ss147734716	ENSMUSSNP1662036	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C						G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38692971					SNP	C	C	C	C	C	G	C	G	G	G	G	G	G	G	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50947119	NES14150404	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:127543367 () rs orientation: forward

Symbol	Name	Function Class
Myo1a	myosin IA	within coordinates
Rr213604	regulatory region 213604	234 bp proximal
Rr221966	regulatory region 221966	610 bp distal
Rr226492	regulatory region 226492	within coordinates
Tssr96246	transcription start site region 96246	692 bp downstream
Tssr96247	transcription start site region 96247	659 bp downstream