rs386940836 SNP Detail

Summary

• ID
  rs386940836
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  138
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:172198546 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCCTC CCTCCCTCCC TCCCTCCCTC
  Y
  CTCTCTCTCT CTCTCTCTCT CTCTC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	BTBR T<+> Itpr3/J	C57BL/6J	C58/J	NZO/HlLtJ
ss915129056	MGP_WTSI_1_172370979	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	T	T
SNP Consensus Information
SNP					Consensus Type	BTBR T<+> Itpr3/J	C57BL/6J	C58/J	NZO/HlLtJ
rs386940836					SNP	C	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss915129056	MGP_WTSI_1_172370979	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:172198546 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1045	CpG island 1045	1523 bp distal
Cpgi1046	CpG island 1046	1010 bp distal
Kcnj10	potassium inwardly-rectifying channel, subfamily J, member 10	within coordinates
Rr423550	regulatory region 423550	1990 bp distal
Tssr10190	transcription start site region 10190	494 bp downstream
Tssr10191	transcription start site region 10191	278 bp downstream
Tssr10192	transcription start site region 10192	98 bp downstream