rs38694152 SNP Detail

Summary

• ID
  rs38694152
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  126
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:69815154 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ATAAGCTGTG GTTGTGTCCA GCCTGCACTT TCCCTTTCCC
  AGGTCCTCCT GTCCTGGGCC ACACACACCA GTCACTCCCA TTCTGCCAGC TAGAGCCACC
  R
  AGGCCTGTGC TCTCTACCTG CACCTGCCTC AAGCTGAGGT TTTGTCCCTT GTAACAAAGA
  AGTCTCGACT AATGCAGCAC ACTAAGTACT TAGCTTGCAT                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	KK/HlJ
ss51016761	NES14398978	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	KK/HlJ
rs38694152					SNP	G	G	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51016761	NES14398978	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:69815154 () rs orientation: forward

Symbol	Name	Function Class
Cdkl1	cyclin dependent kinase like 1	within coordinates
Rr467132	regulatory region 467132	1711 bp distal
Rr467133	regulatory region 467133	589 bp distal
Tssr116524	transcription start site region 116524	1088 bp upstream
Tssr116525	transcription start site region 116525	923 bp downstream
Tssr116526	transcription start site region 116526	1353 bp downstream