rs38694576 SNP Detail

Summary

• ID
  rs38694576
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:7460831 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATGCGCACA AAGAGCCTGG
  ACGCGCGGGC GGCGGCCTCG GAGGCGCGCA GCGACGCAAT GCGCAGGCGC AAGAACTGTC
  CCTCTGCGCT CCCGCAGGAA AGGACGCAGT GACTGGGCCC GCGGGTGGGG CAGGCCTCTC
  GGGGGTGAGG GGTAGGGGGT GGGGGAATGG GGGAAAGCCT GACGTAAGGG GCGTGGCTAA
  R
  CTCTAGAACC GGCCCGCCAC TGCAGCCCCT GCTACAGATT AACCGTGCCC AGTCTCCCCA
  CCTTCCACTT GTTTATGTGA ATGTTTTCTA GCTGGCAGAT TATGTTTCTT TATGCCTTCA
  TAAGCTACAA ATTTTTTATT ATAAATCCTA ATTGATGTCT TTGCCTGATA CGTACCAGCC
  TGTGACTCCA AAGAGTACAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50591952	NES13643754	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38694576					SNP	A	A	A	A	A	A	A	A	A	A	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50591952	NES13643754	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:7460831 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10559	CpG island 10559	within coordinates
Gm58988	predicted gene, 58988	within coordinates
Rr543685	regulatory region 543685	275 bp distal
Rr543686	regulatory region 543686	within coordinates
Rtn3	reticulon 3	185 bp upstream
Tssr5428	transcription start site region 5428	482 bp upstream
Tssr5429	transcription start site region 5429	398 bp upstream
Tssr5430	transcription start site region 5430	302 bp upstream
Tssr5431	transcription start site region 5431	176 bp upstream
Tssr157986	transcription start site region 157986	1125 bp upstream
Tssr157987	transcription start site region 157987	343 bp upstream
Tssr157988	transcription start site region 157988	318 bp upstream
Tssr157989	transcription start site region 157989	256 bp upstream
Tssr157990	transcription start site region 157990	237 bp upstream
Tssr157991	transcription start site region 157991	187 bp upstream