rs38696905 SNP Detail

Summary

• ID
  rs38696905
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  126
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:17101878 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CATCAGGAAA CCTAGATACC AGATGACTGT GTTGCATATT
  CATGAAGACC CTGAGGCTCT TTCATCACCT GTGGGAGGAA CAGGTTCCAA TAATGAGTCA
  Y
  CTCCATCAAA CATTGACTGG GAAATAGAAA CAGATAATTC AGATTCACCA GCAGGTGGCG
  ACATGAAACC ACCAAACGGT AAGCAACCCA TTACACTCCA                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50627388	NES13609269	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38696905					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50627388	NES13609269	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:17101878 () rs orientation: forward

Symbol	Name	Function Class
Prune2	prune homolog 2	within coordinates
Rr544799	regulatory region 544799	44 bp proximal
Tssr155419	transcription start site region 155419	1104 bp upstream
Tssr158489	transcription start site region 158489	914 bp downstream
Tssr158490	transcription start site region 158490	1007 bp downstream
Tssr158491	transcription start site region 158491	1070 bp downstream