rs386972414 SNP Detail

Summary

• ID
  rs386972414
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  138
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:108887185 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTCTC TGGAGGAGGA CTCTTAGGTC
  S
  CCTGCTCCTG CCATTGCTGG GACTT                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss920017654	MGP_WTSI_9_109058117	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	C	G	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs386972414					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	C	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss920017654	MGP_WTSI_9_109058117	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:108887185 () rs orientation: forward

Symbol	Name	Function Class
Atrip	ATR interacting protein	1630 bp downstream
Gm53191	predicted gene, 53191	within coordinates
Rr401693	regulatory region 401693	1502 bp upstream
Rr686956	regulatory region 686956	252 bp distal
Rr686957	regulatory region 686957	1124 bp proximal
Rr686958	regulatory region 686958	1545 bp proximal
Rr686959	regulatory region 686959	1691 bp proximal
Shisa5	shisa family member 5	340 bp downstream
Trex1	three prime repair exonuclease 1	within coordinates
Tssr87215	transcription start site region 87215	1823 bp downstream
Tssr87216	transcription start site region 87216	1770 bp downstream
Tssr87217	transcription start site region 87217	1697 bp downstream
Tssr87218	transcription start site region 87218	1397 bp downstream
Tssr87219	transcription start site region 87219	1164 bp downstream
Tssr87220	transcription start site region 87220	1076 bp downstream
Tssr87221	transcription start site region 87221	857 bp downstream
Tssr87222	transcription start site region 87222	808 bp downstream
Tssr91571	transcription start site region 91571	394 bp upstream
Tssr91572	transcription start site region 91572	119 bp downstream
Tssr91573	transcription start site region 91573	276 bp downstream
Tssr91574	transcription start site region 91574	506 bp downstream
Tssr91575	transcription start site region 91575	557 bp downstream
Tssr91576	transcription start site region 91576	642 bp downstream
Tssr91577	transcription start site region 91577	1099 bp downstream
Tssr91578	transcription start site region 91578	1559 bp downstream
Tssr91579	transcription start site region 91579	1594 bp downstream