rs386983334 SNP Detail

Summary

• ID
  rs386983334
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  138
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:47747014 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCACT CCTGTCTCGG AAAAACAAAA
  M
  AACAACAACA ACAACAACAA CAACA                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LG/J	LP/J	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SEA/GnJ	SJL/J	ST/bJ	SWR/J	WSB/EiJ
ss923591847	MGP_WTSI_17_47436089	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	C	A	C	C	A	A	A	A	A	A	C	A	A	A	A	A	A	C	A	A	A	C	C	A	A	C	A	A	C	C	A	A	C	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LG/J	LP/J	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SEA/GnJ	SJL/J	ST/bJ	SWR/J	WSB/EiJ
rs386983334					SNP	A	A	A	A	C	A	C	C	A	A	A	A	A	A	C	A	A	A	A	A	A	C	A	A	A	C	C	A	A	C	A	A	C	C	A	A	C	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss923591847	MGP_WTSI_17_47436089	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:47747014 () rs orientation: forward

Symbol	Name	Function Class
AI661453	expressed sequence AI661453	550 bp upstream
Cimip3	ciliary microtubule inner protein 3	within coordinates
Cpgi9259	CpG island 9259	105 bp proximal
Rr339933	regulatory region 339933	186 bp proximal
Tssr144911	transcription start site region 144911	496 bp upstream
Tssr144912	transcription start site region 144912	512 bp upstream
Tssr144913	transcription start site region 144913	527 bp upstream
Tssr144914	transcription start site region 144914	558 bp upstream
Tssr144915	transcription start site region 144915	642 bp upstream
Tssr148437	transcription start site region 148437	1131 bp downstream
Tssr148438	transcription start site region 148438	1276 bp downstream