rs38699434 SNP Detail

Summary

• ID
  rs38699434
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  126
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:97965844 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TACCATTTTG TGTGATTGTA AAGGCTTAGT AAAAGCAGAA
  TGAACTAAGT AACCAATTCT GAAAGTAAGC AGGCACTAAT GTTTCCCTTC CCGAGCCTTT
  M
  ACTGTTGCTG CACTGTCATA GACATTTCAA TTGTGAAGTA TGACCACTCC AATCTCCTGA
  CAGTTGACAG CTAAACGATT AAAACAAAAG GAAAAACTAA                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	FVB/NJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51762609	NES14550096	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	A	C	C	C
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	FVB/NJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38699434					SNP	C	C	C	C	C	C	A	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51762609	NES14550096	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:97965844 () rs orientation: forward

Symbol	Name	Function Class
Gm25668	predicted gene, 25668	1791 bp upstream
Rr370004	regulatory region 370004	246 bp downstream
Senp1	SUMO1/sentrin specific peptidase 1	within coordinates