ATCGG AGCTCCTTCT CGGGCTCCTG R GGCTGACCTG GGAAGCACAC CCCAC R = A/G Note: Sequence in lower case indicates low-complexity or repetitive sequence |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type | 129P2/OlaHsd |
129S1/SvImJ |
129S5/SvEvBrd |
A/J |
AKR/J |
B10.RIII-H2 |
BALB/cByJ |
BALB/cJ |
BTBR T<+> Itpr3 |
BUB/BnJ |
C3H/HeH |
C3H/HeJ |
C57BL/6J |
C57BL/6NJ |
C57BL/10J |
C57BL/10SnJ |
C57BR/cdJ |
C57L/J |
C58/J |
CAST/EiJ |
CBA/J |
CE/J |
CZECHII/EiJ |
DBA/1J |
DBA/2J |
FVB/NJ |
I/LnJ |
JF1/MsJ |
KK/HlJ |
LG/J |
LP/J |
MA/MyJ |
MOLF/EiJ |
NOD/ShiLtJ |
NON/ShiLtJ |
NZB/BlNJ |
NZO/HlLtJ |
NZW/LacJ |
PL/J |
PWK/PhJ |
QSi3/Ianm |
QSi5/Ianm |
RF/J |
RIIIS/J |
SEA/GnJ |
SJL/J |
SPRET/EiJ |
ST/bJ |
SWR/J |
WSB/EiJ |
ZALENDE/EiJ |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ss921570631 | MGP_WTSI_12_112675113 | EVA_MGPV3 | EVA_MGPV3 | f | SNP | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | A | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | A | A | G | G |
SNP Consensus Information | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
SNP | Consensus Type | 129P2/OlaHsd |
129S1/SvImJ |
129S5/SvEvBrd |
A/J |
AKR/J |
B10.RIII-H2 |
BALB/cByJ |
BALB/cJ |
BTBR T<+> Itpr3 |
BUB/BnJ |
C3H/HeH |
C3H/HeJ |
C57BL/6J |
C57BL/6NJ |
C57BL/10J |
C57BL/10SnJ |
C57BR/cdJ |
C57L/J |
C58/J |
CAST/EiJ |
CBA/J |
CE/J |
CZECHII/EiJ |
DBA/1J |
DBA/2J |
FVB/NJ |
I/LnJ |
JF1/MsJ |
KK/HlJ |
LG/J |
LP/J |
MA/MyJ |
MOLF/EiJ |
NOD/ShiLtJ |
NON/ShiLtJ |
NZB/BlNJ |
NZO/HlLtJ |
NZW/LacJ |
PL/J |
PWK/PhJ |
QSi3/Ianm |
QSi5/Ianm |
RF/J |
RIIIS/J |
SEA/GnJ |
SJL/J |
SPRET/EiJ |
ST/bJ |
SWR/J |
WSB/EiJ |
ZALENDE/EiJ |
||||
rs387003701 | SNP | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | A | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | A | A | G | G |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type |
Alleles |
---|---|---|---|---|---|---|
ss921570631 | MGP_WTSI_12_112675113 | SC_MOUSE_GENOMES | SC_MOUSE_GENOMES | f | SNP | A/G |
Location: Chr12:112641547 () rs orientation: forward | ||||||||
Symbol | Name | Transcript | Protein | Function Class |
Allele | Residue | Codon Position |
AA Position |
---|---|---|---|---|---|---|---|---|
Akt1 | thymoma viral proto-oncogene 1 | 281 bp upstream | ||||||
Cpgi5173 | CpG island 5173 | 204 bp distal | ||||||
Gm30150 | predicted gene, 30150 | within coordinates | ||||||
Rr369631 | regulatory region 369631 | 317 bp upstream | ||||||
Rr473553 | regulatory region 473553 | 848 bp distal | ||||||
Rr473554 | regulatory region 473554 | 692 bp distal | ||||||
Rr473555 | regulatory region 473555 | 713 bp distal | ||||||
Rr473556 | regulatory region 473556 | within coordinates | ||||||
Rr473557 | regulatory region 473557 | 110 bp distal | ||||||
Rr473558 | regulatory region 473558 | 334 bp proximal | ||||||
Rr473559 | regulatory region 473559 | 525 bp proximal | ||||||
Rr473560 | regulatory region 473560 | 771 bp proximal | ||||||
Tssr115391 | transcription start site region 115391 | 690 bp downstream | ||||||
Tssr117877 | transcription start site region 117877 | 1086 bp upstream | ||||||
Tssr117878 | transcription start site region 117878 | 1027 bp upstream | ||||||
Tssr117879 | transcription start site region 117879 | 838 bp upstream | ||||||
Tssr117880 | transcription start site region 117880 | 746 bp upstream | ||||||
Tssr117881 | transcription start site region 117881 | 728 bp upstream | ||||||
Tssr117882 | transcription start site region 117882 | 349 bp upstream | ||||||
Tssr117883 | transcription start site region 117883 | 299 bp upstream | ||||||
Tssr117884 | transcription start site region 117884 | 276 bp upstream |
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO) |
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last database update 12/17/2024 MGI 6.24 |
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