rs387037089 SNP Detail

Summary

• ID
  rs387037089
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  138
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:37614397 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CATTC CCTACCCTAA CACACACACA
  S
  ACACACACAC ACACACACAC ACACA                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CZECHII/EiJ	FVB/NJ	JF1/MsJ	KK/HlJ	MOLF/EiJ	PWK/PhJ	SEA/GnJ	SPRET/EiJ
ss916041208	MGP_WTSI_3_37560248	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CZECHII/EiJ	FVB/NJ	JF1/MsJ	KK/HlJ	MOLF/EiJ	PWK/PhJ	SEA/GnJ	SPRET/EiJ
rs387037089					SNP	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss916041208	MGP_WTSI_3_37560248	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:37614397 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Afg2a	AFG2 AAA ATPase homolog A			Intron
				Noncoding-Transcript-Variant
Rr575505	regulatory region 575505			1131 bp distal
Rr575506	regulatory region 575506			within coordinates