rs38703748 SNP Detail

Summary

• ID
  rs38703748
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:19524122 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCTAGAGGG ATGAGAGTCT
  GTGCATAGGC AGCAATTTTT ACTTTTTCTT CTAGCTTAAA ACATTAAGTT GTGGGAAGTT
  ATTCCCACAG TGTTAGTTAG TGGATCCAAA GCTAAGCTAA CACGACCATT GTACTACATT
  GCCAAATTAA GTCTTTTTTT TGTGTGTGTG TACTTCGGAG AGCATGAAAT TATAATTCTG
  R
  AAGCATGGCA CAAACAAAAA CTACTTGGAT TAAGGCAGCT ATCATGACCG CACAGCTTCC
  TTAAGATTCA TGTAACAACT GAGGCCACAG TGTCCTCCAC TCCATGTAAG CAGTGGAGTG
  TAGACTAAGT CAGTGATCTC ACAAGCTAAA TTCAGTAGTT GTAGGAGGAA CTGGAAATTT
  TTTGATACAC TTGCTAGTAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51794177	NES14546385	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38703748					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51794177	NES14546385	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:19524122 () rs orientation: forward

Symbol	Name	Function Class
Lamp3	lysosomal-associated membrane protein 3	within coordinates
Rr391425	regulatory region 391425	258 bp upstream
Tssr140331	transcription start site region 140331	921 bp downstream
Tssr140332	transcription start site region 140332	933 bp downstream
Tssr140333	transcription start site region 140333	968 bp downstream
Tssr140334	transcription start site region 140334	998 bp downstream