rs38706568 SNP Detail

Summary

• ID
  rs38706568
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:102056154 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GATCTGCTAT CCTGTTAAAA
  AGAGGAGTAA GATCATGAAT GTTATCTAGA ACCAAGCACC CCCTTCAGTG TGTGTTGATG
  AAACTGCATC TCAGAACTTG AAAAGATCCT GCCTTTTCTA GAAGAGAGTG TGACCCCTCA
  GGTCTTCTGG ACTTCGTGTT TGTCACGCTG TGAGGAACCA TGACTGTACC TTGTGCAGAC
  Y
  ACATATAATC TCACTTTCAG TGGTACACAT TCTTCACATA CAGGTCTGAT AGCAACCTTA
  GGGGAAAGAC TGTTTTAGTC ATTTCTACTC TGCCCAAATT TGGGTGGGCA AGCAATAAAT
  CTTGTGACAA CTTTATAAAC ATGATACAAC TTGACCCTCA TGGCTATTAT CCCTATTAAA
  AATACACACA CTCCTCAACC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51587519	NES14668403	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38706568					SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51587519	NES14668403	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:102056154 () rs orientation: forward

Symbol	Name	Function Class
Gm65665	predicted gene, 65665	857 bp upstream
Rr582191	regulatory region 582191	995 bp proximal