rs387073143 SNP Detail

Summary

• ID
  rs387073143
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  138
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:104433871 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTCTC TCTCTCTCTC TCTCTCTCTC
  Y
  CTCTCTCTCT CTCTCTCATA TAACT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S5/SvEvBrd	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	LEWES/EiJ	LG/J	MOLF/EiJ	PL/J	PWK/PhJ	RF/J	SEA/GnJ	SM/J	SPRET/EiJ	WSB/EiJ
ss916330334	MGP_WTSI_3_104526555	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	T	C	C	C	C	C	T	T	T	T	T	T	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S5/SvEvBrd	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	LEWES/EiJ	LG/J	MOLF/EiJ	PL/J	PWK/PhJ	RF/J	SEA/GnJ	SM/J	SPRET/EiJ	WSB/EiJ
rs387073143					SNP	C	C	C	C	C	C	C	C	T	C	C	C	C	C	T	T	T	T	T	T	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss916330334	MGP_WTSI_3_104526555	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:104433871 () rs orientation: forward

Symbol	Name	Function Class
A530041M06Rik	RIKEN cDNA A530041M06 gene	within coordinates
Rr582533	regulatory region 582533	756 bp distal
Rr582534	regulatory region 582534	72 bp proximal
Rr582535	regulatory region 582535	1342 bp proximal