rs387074440 SNP Detail

Summary

• ID
  rs387074440
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  138
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:137639992 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTTTT TCTTTTCTTT TTCTTTCTTT
  M
  TTTTTTTTTT TTTTTTAATT TTTTG                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CZECHII/EiJ	DBA/1J	FVB/NJ	JF1/MsJ	KK/HlJ	LP/J	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	QSi5/Ianm	RF/J	SEA/GnJ	SM/J	SPRET/EiJ	ST/bJ	WSB/EiJ	ZALENDE/EiJ
ss917103453	MGP_WTSI_4_137912681	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	A	C	C	C	C	C	C	C	C	A	C	A	A	C	A	C	C	C	C	C	C	A	C	A	C	A	C	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CZECHII/EiJ	DBA/1J	FVB/NJ	JF1/MsJ	KK/HlJ	LP/J	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	QSi5/Ianm	RF/J	SEA/GnJ	SM/J	SPRET/EiJ	ST/bJ	WSB/EiJ	ZALENDE/EiJ
rs387074440					SNP	C	C	C	C	C	A	C	C	C	C	C	C	C	C	A	C	A	A	C	A	C	C	C	C	C	C	A	C	A	C	A	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss917103453	MGP_WTSI_4_137912681	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:137639992 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15141	CpG island 15141	614 bp proximal
Ece1	endothelin converting enzyme 1	within coordinates
Rr602774	regulatory region 602774	1752 bp distal
Rr602775	regulatory region 602775	1842 bp distal
Rr602776	regulatory region 602776	187 bp proximal
Rr602777	regulatory region 602777	1219 bp proximal
Tssr39791	transcription start site region 39791	806 bp upstream
Tssr39792	transcription start site region 39792	866 bp upstream
Tssr39793	transcription start site region 39793	1016 bp upstream