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rs387086342 SNP Detail
Summary
  • ID
    rs387086342
  • Variation Type
    SNP
  • Alleles
    A/G
Genome Location and Flanking Sequence
  • Location
    Chr17:40160086 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                          TGAGA AAGCTGTGAT TAAGAAGAGA
    R
    TACCACCACT GAACTGAAAT CTTCT                                      
    
    R = A/G
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ss923560669 MGP_WTSI_17_39849195 EVA_MGPV3 EVA_MGPV3 f SNP G G G G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G G G G G G
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
rs387086342 SNP G G G G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G G G G G G
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss923560669 MGP_WTSI_17_39849195 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP A/G
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr17:40160086 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
AY036118 cDNA sequence AY036118 within coordinates
Cpgi9159 CpG island 9159 364 bp distal
Gm26917 predicted gene, 26917 407 bp downstream
Rn18s 18S ribosomal RNA 994 bp distal
Rn18s-rs5 18s RNA, related sequence 5 993 bp downstream
Tssr144610 transcription start site region 144610 1980 bp downstream
Tssr144611 transcription start site region 144611 1857 bp downstream
Tssr144612 transcription start site region 144612 1747 bp downstream
Tssr144613 transcription start site region 144613 1603 bp downstream
Tssr144614 transcription start site region 144614 1581 bp downstream
Tssr144615 transcription start site region 144615 1500 bp downstream
Tssr144616 transcription start site region 144616 1410 bp downstream
Tssr144617 transcription start site region 144617 1383 bp downstream
Tssr144618 transcription start site region 144618 1366 bp downstream
Tssr144619 transcription start site region 144619 1323 bp downstream
Tssr144620 transcription start site region 144620 1300 bp downstream
Tssr144621 transcription start site region 144621 1186 bp downstream
Tssr144622 transcription start site region 144622 1170 bp downstream
Tssr144623 transcription start site region 144623 1140 bp downstream
Tssr144624 transcription start site region 144624 1005 bp downstream
Tssr144625 transcription start site region 144625 988 bp downstream
Tssr144626 transcription start site region 144626 959 bp downstream
Tssr144627 transcription start site region 144627 927 bp downstream
Tssr144628 transcription start site region 144628 768 bp downstream
Tssr144629 transcription start site region 144629 694 bp downstream
Tssr144630 transcription start site region 144630 685 bp downstream
Tssr144631 transcription start site region 144631 588 bp downstream
Tssr144632 transcription start site region 144632 478 bp downstream
Tssr144633 transcription start site region 144633 431 bp downstream
Tssr148065 transcription start site region 148065 1411 bp upstream
Tssr148066 transcription start site region 148066 1334 bp upstream
Tssr148067 transcription start site region 148067 1234 bp upstream
Tssr148068 transcription start site region 148068 1136 bp upstream
Tssr148069 transcription start site region 148069 953 bp upstream
Tssr148070 transcription start site region 148070 889 bp upstream
Tssr148071 transcription start site region 148071 863 bp upstream
Tssr148072 transcription start site region 148072 535 bp upstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
12/17/2024
MGI 6.24
The Jackson Laboratory