rs38708933 SNP Detail

Summary

• ID
  rs38708933
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:35027196 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGGGTGCCT GGGAAAGTAA
  GGTTATGGAT GGTGTTTCAC TAGCAAACTC ACAACATTCC CTCTGTACCC CTGATACTTA
  CACATATCAA TTCGTTTACA ACCCCCTGGG TAGAGAGGCC TGGAGGGGCC AAGTGGGATC
  TGTAGCACTG ACCCTGCCCT GTGGTATTGG TGTGTGCCCC TTGTGAGAGA CAACTATCAC
  Y
  GTGGTACTAT TCAAACCCAG ACTAGCCTTT TAAGCCTGAC CGGGGGGAGG GGGGGGGGAG
  GATCTAGCCT AGAGGACAGA GAACAGAGTA GATCAGACTC ATAAACCAGA AAGTCTACCC
  CTCGGTCTGG GAGGAATGGC AGTGGTACAA GACACGTTGG CATCTCGGGG CTGCCCATAG
  GTCTCAGCCA GCAAGGGTCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50670786	NES14013370	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	C	T	T	T	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38708933					SNP	T	T	T	T	C	T	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50670786	NES14013370	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:35027196 () rs orientation: forward

Symbol	Name	Function Class
4930581F22Rik	RIKEN cDNA 4930581F22 gene	828 bp upstream
Cpgi21550	CpG island 21550	353 bp proximal
Gm57537	predicted gene, 57537	1300 bp downstream
Rr676432	regulatory region 676432	338 bp proximal
Rr676433	regulatory region 676433	849 bp proximal
Rr676434	regulatory region 676434	963 bp proximal
Rr676435	regulatory region 676435	1145 bp proximal
St3gal4	ST3 beta-galactoside alpha-2,3-sialyltransferase 4	within coordinates
Tssr84325	transcription start site region 84325	840 bp upstream
Tssr84326	transcription start site region 84326	1030 bp upstream
Tssr88717	transcription start site region 88717	860 bp downstream
Tssr88718	transcription start site region 88718	904 bp downstream
Tssr88719	transcription start site region 88719	1075 bp downstream
Tssr88720	transcription start site region 88720	1794 bp downstream