rs38708997 SNP Detail

Summary

• ID
  rs38708997
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:57173474 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAATGAGAGA AGGCTCAGAT
  GCATCTAGTG GCCCAAAATC CTCTGCGAAA AAAACAGCCT GAAGTTGTGT TGTGCTGGCA
  CCATTAGCCT GAGCTCAGAG CACCTTAGGG AGGGCAGCAG CGCAGAGCTT CAGAGGCTTA
  GGGCCAGGGG TCTCAACTGA GTGAGGTAAA CAGTTTTCCA GAGGCGTGCT GGCAAACAGA
  R
  TCTTCCTCCT CCAGAAAGCA GGGGGGCAAT CTCTTGTCAG TCTCAGTGTC TCCTGTGACT
  CCCCCAATCT CGATCTGCCT GTCCCCTCCA TTATTCCTCT CTGGCTGCCT GATGCAGCAG
  ACCCAGAAAG CCAACCGAAA TTCATTGCAA TCCTATATGC CTTCTTGTCA GTCTTTGTTA
  ACCCGCTCCA GAATGCCTTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52020749	NES15041785	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38708997					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52020749	NES15041785	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:57173474 () rs orientation: forward

Symbol	Name	Function Class
Gm68485	predicted gene, 68485	within coordinates
Gm68491	predicted gene, 68491	528 bp downstream
Rr679625	regulatory region 679625	736 bp distal
Rr679626	regulatory region 679626	1094 bp proximal
Tssr89773	transcription start site region 89773	401 bp upstream
Tssr89774	transcription start site region 89774	373 bp upstream