rs387129946 SNP Detail

Summary

• ID
  rs387129946
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  138
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:86576911 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGCGT GCACGCACGC ACACACACAC
  A
  CACACACACA CACACACACC ATTCT                                      
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	JF1/MsJ	LG/J	LP/J	NON/ShiLtJ	NZB/BlNJ	PWK/PhJ	RIIIS/J	SEA/GnJ	SM/J	SPRET/EiJ	ST/bJ	ZALENDE/EiJ
ss642318059	FVB_NJ_9_86588891	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	JF1/MsJ	LG/J	LP/J	NON/ShiLtJ	NZB/BlNJ	PWK/PhJ	RIIIS/J	SEA/GnJ	SM/J	SPRET/EiJ	ST/bJ	ZALENDE/EiJ
rs387129946					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss642318059	FVB_NJ_9_86588891	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:86576911 () rs orientation: forward

Symbol	Name	Function Class
A330041J22Rik	RIKEN cDNA A330041J22 gene	602 bp upstream
Cpgi22104	CpG island 22104	355 bp proximal
Me1	malic enzyme 1, NADP(+)-dependent, cytosolic	within coordinates
Rr197818	regulatory region 197818	1711 bp distal
Rr206830	regulatory region 206830	within coordinates
Tssr90786	transcription start site region 90786	782 bp downstream
Tssr90787	transcription start site region 90787	812 bp downstream
Tssr90788	transcription start site region 90788	913 bp downstream
Tssr90789	transcription start site region 90789	980 bp downstream
Tssr90790	transcription start site region 90790	1039 bp downstream