rs38715744 SNP Detail

Summary

• ID
  rs38715744
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:4432368 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCAATCAAA GTGCAGAGTT
  ATGGAGGCCA GACCCAATTG ATGAGTCATT CTTTGATAAA CAATTCTAAG GTGCTATTTG
  CTCATGAGAG TGAAAAGACC TAGACCTTTT CGTATGACTT ATTTATTCTT TATTATGACC
  ATAAAGGTGG AATTATGACT CATATGGCTG TATGTGTATT CAATGTGGCT ACTTGGCAGA
  R
  CATGCTATAA CAAAATCACT GTCTCTGCAC TTTTTCACAG CTACTTCCTC ACAGTGGAAT
  TTGAACATGT CACACGTGAA GTCCCATATA GTATCCCCCA ACCCTTCTTA AGATTAATGT
  GTTTGAAAGA AGCCTCTCCT GCTTGGATTT TCCACTGGGC TTCCTACCTA TGCTCTGAAC
  AAGAAAAACA AATGAAAGTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51224824	NES14300776	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38715744					SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51224824	NES14300776	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:4432368 () rs orientation: forward

Symbol	Name	Function Class
Gm37483	predicted gene, 37483	1201 bp downstream
Rp1	retinitis pigmentosa 1 (human)	within coordinates
Tssr10872	transcription start site region 10872	1899 bp upstream
Tssr10873	transcription start site region 10873	1833 bp upstream