rs387166005 SNP Detail

Summary

• ID
  rs387166005
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  138
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:114395255 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACACA CACACACACA TACACACACA
  C
  ACACACACAC ACATACACAT ACACA                                      
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	C57BL/6J	CE/J	DBA/2J	KK/HlJ	WSB/EiJ
ss920043537	MGP_WTSI_9_114566187	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	C57BL/6J	CE/J	DBA/2J	KK/HlJ	WSB/EiJ
rs387166005					SNP	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss920043537	MGP_WTSI_9_114566187	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:114395255 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22424	CpG island 22424	1602 bp distal
Rr383952	regulatory region 383952	954 bp downstream
Rr687644	regulatory region 687644	1328 bp distal
Trim71	tripartite motif-containing 71	1818 bp upstream
Tssr91848	transcription start site region 91848	1978 bp upstream
Tssr91849	transcription start site region 91849	1892 bp upstream
Tssr91850	transcription start site region 91850	1853 bp upstream
Tssr91851	transcription start site region 91851	1838 bp upstream