rs38719949 SNP Detail

Summary

• ID
  rs38719949
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:62322423 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTCCTTGTGC CCCCTCTCTC
  CTTCAGTCAA GGTCAATCCC ATAGCTCAGC ACGCTCTCTC ACAACGTTAT CCAGGCCACT
  AGCTCCCGAA CTGGACCTGG TGTTGATGCT TGAATGATGC CCTTGTATCC CCACCCCCAC
  CCTTACCCCC ACCCCCAGGT CGAAGCAGCG AGCGAAACCA GTATCAGTTC ACTCCAGGCC
  Y
  TTCCTCTGCT TCTCACCCAG AGAGGAGTGC AAGCGTCCCT GGTGGGCTCC ACCTTCACCT
  CTGGCCCTGG ACGTTTGTGT TTTCCTGGGC GGGAGGAAGA GAGCTGGGGA GGACCGCTTC
  TGTTTCCAGC AGCTTCCTGG AGATTGCGTA GGCTAGAGCT AGCTCCAGGA CTGGGCTGGG
  CGGTGACCCC TCAGCTGCCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BTBR T<+> Itpr3/J	CAST/EiJ	LG/J	NZW/LacJ	SM/J	WSB/EiJ
ss50718947	NES14253075	PERLEGEN	MM_PANEL2	f	SNP	T	T	C		C		T
ss322982318	CHEV_9_62262948	CHEVERUD	SCREENING_POP	f	SNP				C		T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BTBR T<+> Itpr3/J	CAST/EiJ	LG/J	NZW/LacJ	SM/J	WSB/EiJ
rs38719949					SNP	T	T	C	C	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50718947	NES14253075	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:62322423 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21896	CpG island 21896	306 bp proximal
Gm40523	predicted gene, 40523	within coordinates
Rr1154	regulatory region 1154	within coordinates
Rr196313	regulatory region 196313	1623 bp distal
Rr196314	regulatory region 196314	1023 bp distal
Rr196315	regulatory region 196315	578 bp proximal