rs38722264 SNP Detail

Summary

• ID
  rs38722264
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:15876873 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGGCT TTCCCTTAAG TTGGAATCTC
  R
  AATATCTTAT TTTAGAATTT GTTTT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	NOD/ShiLtJ	SM/J
ss51880909	NES14893985	PERLEGEN	MM_PANEL2	f	SNP			G		A		G
ss148377791	ENSMUSSNP120209	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A		A
ss322108699	CHEV_7_16728297	CHEVERUD	SCREENING_POP	f	SNP						G		A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	NOD/ShiLtJ	SM/J
rs38722264					SNP	A	A	G	A	A	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51880909	NES14893985	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:15876873 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi18356	CpG island 18356			1737 bp distal
Cpgi18357	CpG island 18357			1821 bp proximal
Slc8a2	solute carrier family 8 (sodium/calcium exchanger), member 2			Intron
				Noncoding-Transcript-Variant