rs38722650 SNP Detail

Summary

• ID
  rs38722650
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:10412522 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGGCTGGTA CTGAGTGAGA
  CAGCTCAAGA ACACTTTATC ACAGCAGAGA GACATTGCCA AACAGAGCCA TGTGGACAGT
  GGTCCCCGCC TCACCTTGGC TATAAGCTGA AGAACACCTT GGCTCTGCTC AGGCCGAGCA
  AACACAGGTG GGGCTCTGGG AGAGAGGCTG TGGAGTGTTT ATAGAGGGTA ATGACGTGGC
  R
  AGACACCTGG ACAGGCCACC TAGTGCCTCC CCTTTCCAGA CTGGATGGAA CAGGTCTCCG
  CAGAGCTGAG GAGCTCAGAG AATAGCCATG TAAGCCAGAG AGCTGGGGGG CTTTGGGGAG
  TAACAGGAAG TGTGCAGGCT CCCTCTAAAC AGCCCCCACA AGGCAGCTCA GCCAATCACC
  TGAGACAGAG GCTCAAGAAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50602494	NES13639511	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38722650					SNP	G	G	G	G	G	G	G	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50602494	NES13639511	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:10412522 () rs orientation: forward

Symbol	Name	Function Class
Gm59152	predicted gene, 59152	1831 bp upstream
Rr544111	regulatory region 544111	711 bp distal
Rr544112	regulatory region 544112	695 bp proximal
Rr544113	regulatory region 544113	956 bp proximal
Syt7	synaptotagmin VII	within coordinates
Tssr155051	transcription start site region 155051	32 bp upstream