rs38722674 SNP Detail

Summary

• ID
  rs38722674
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:129205474 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATAAGCCCT AGGGATTGAA
  TCTAGGACCT TGTGAATACT AGGCAAGTAT ATGCTTACTA GACCAGCATA GTCCTGTATC
  CCCAGACCTT GTTTTACCTT TTATATTCAC TAAATTGCAC AGGATGGCTT TGTGCTTTCT
  CTGTAGTTAG GCAGTCCTTC AACAGCCATT CTCCTGACTC AGCTTCTCAG GTATGGATAG
  M
  AGCCAGTGAA CCAGGCTTCG CTTGCAATCA ATCTTTTTTT GTTTGTTTTG TTTTTTTCTG
  TTTTTGTTTT TTGTTTGTTT GTTTGTTTGT TTTCGAGACA GGTTTTCTCT GTGTAGCCTT
  GACTGTCCTG GAACTCACTT TGTAGACCAG ACTGGCCTCA AACTCAGAGA TCCGCCTGCC
  TCTGCCTCTG CCTCTGCCTC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ	WSB/EiJ
ss51418745	NES13704022	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	A	C	C
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ	WSB/EiJ
rs38722674					SNP	C	C	C	C	C	C	C	C	A	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51418745	NES13704022	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:129205474 () rs orientation: forward

Symbol	Name	Function Class
Gm38906	predicted gene, 38906	748 bp downstream
Gm47861	predicted gene, 47861	within coordinates
Rr399972	regulatory region 399972	816 bp upstream
Tssr59119	transcription start site region 59119	865 bp upstream
Tssr59120	transcription start site region 59120	884 bp upstream
Tssr59121	transcription start site region 59121	1991 bp upstream
Tssr63549	transcription start site region 63549	576 bp downstream
Tssr63550	transcription start site region 63550	726 bp downstream
Tssr63551	transcription start site region 63551	1751 bp downstream