rs38723881 SNP Detail

Summary

• ID
  rs38723881
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:82119285 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCCATAAGG AGGGACCTGG
  ATGGCTACTG GGGACAGAGA GAACCTCGGG ACTTTTCCGT TATTGCTGGG GTCAGTTGTG
  AGCTCCAGTT AAAGGGACTT CTGTAGTAAT GGCCTCCTTG TTCAGGGGAG GGCTGCTCTG
  AAAACCCATG AGGCCAAATT CTGGTTCTGT TTGCAAGCCT GTAATGGTGG GTTTCTAGGC
  Y
  ACTCTTGGGT TTCCTACTGC CTGATAGCGG AGCCCGTGGC GACTTGTTCT ACTAGTGTAG
  GGGGTGAAGG TGCCTGGCTG GAGGCTCCCT GTGGCTCTTG GGGACAGCAC AGTGTATTGC
  TAAGGACGCT ACCCCCAATA TTAAACATAA AAGCCCCACG GATTTCAGAA CGGGGGTCCA
  TGTGAACTCA TCAACCTGCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss51027287	NES14388224	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs38723881					SNP	T	T	T	T	T	T	C	T	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51027287	NES14388224	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:82119285 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4836	CpG island 4836	235 bp proximal
Gm30799	predicted gene, 30799	within coordinates
Rr257877	regulatory region 257877	316 bp proximal
Rr268520	regulatory region 268520	516 bp proximal
Tssr3883	transcription start site region 3883	870 bp upstream