rs38724026 SNP Detail

Summary

• ID
  rs38724026
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:37166447 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCTGGGTTC CTCAAAGGCA
  AATCCGGATC CTCCAAATAC ACAGATAAGA CTTGGAGGCA CTCCACAGGT ACCCGCTTGT
  GCGCTTGTGT TTGCAGATAC GGGGTGGCAA ACCAAAAAGG ATGAAGACTC CTAGGCACCC
  TGTTTGTTCT TCACCGGGGT TAGACAGAAG TCTGGGCTAA TGTGGAATTA ATAGTTCTGT
  K
  TTACTAAACT TCCACGCCTG CGCCACCGAA GGAGCCCTGC CAGATAGAAC TAGAACCCCA
  TCCCCCACTC CAGGGACAAG CAGAAACATC CGCCGCCCGA GCAAGTCTCT GCGCGTCTTG
  GCAGCCTCCC TCCCCAGCCC TGCTCACCAG CTGTCCCTAG AGAAGGCGCG AAGGAACCAG
  ACACCAGGAG CCAGGGAGGA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50674833	NES14008188	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	T	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38724026					SNP	G	G	G	G	G	G	G	G	G	G	G	G	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50674833	NES14008188	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:37166447 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21569	CpG island 21569	21 bp proximal
Gm10177	predicted gene 10177	1970 bp downstream
Gm48081	predicted gene, 48081	347 bp upstream
Gm65989	predicted gene, 65989	1786 bp downstream
Rr676656	regulatory region 676656	within coordinates
Rr676657	regulatory region 676657	253 bp proximal
Rr676658	regulatory region 676658	358 bp proximal
Rr676659	regulatory region 676659	577 bp proximal
Rr676660	regulatory region 676660	885 bp proximal
Slc37a2	solute carrier family 37 (glycerol-3-phosphate transporter), member 2	within coordinates
Tssr88821	transcription start site region 88821	206 bp downstream
Tssr88822	transcription start site region 88822	230 bp downstream
Tssr88823	transcription start site region 88823	252 bp downstream
Tssr88824	transcription start site region 88824	278 bp downstream
Tssr88825	transcription start site region 88825	293 bp downstream
Tssr88826	transcription start site region 88826	379 bp downstream
Tssr88827	transcription start site region 88827	472 bp downstream
Tssr88828	transcription start site region 88828	495 bp downstream
Tssr88829	transcription start site region 88829	518 bp downstream
Tssr88830	transcription start site region 88830	534 bp downstream
Tssr88831	transcription start site region 88831	579 bp downstream