rs387243916 SNP Detail

Summary

• ID
  rs387243916
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  138
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:31426062 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGAAG AAGAGAGACG AGAATGGAAG
  M
  GAAGGGGAGG GGAGGGGAGG GGAGG                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	C57BL/6J	C57BL/10SnJ	CE/J	LG/J	LP/J	MA/MyJ	WSB/EiJ
ss923507825	MGP_WTSI_17_31207088	EVA_MGPV3	EVA_MGPV3	f	SNP	A	C	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	C57BL/6J	C57BL/10SnJ	CE/J	LG/J	LP/J	MA/MyJ	WSB/EiJ
rs387243916					SNP	A	C	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss923507825	MGP_WTSI_17_31207088	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:31426062 () rs orientation: forward

Symbol	Name	Function Class
Rr339574	regulatory region 339574	338 bp proximal
Rr370213	regulatory region 370213	1931 bp downstream
Rr370214	regulatory region 370214	733 bp upstream
Tssr143654	transcription start site region 143654	961 bp upstream
Tssr147277	transcription start site region 147277	1709 bp downstream
Tssr147278	transcription start site region 147278	1725 bp downstream
Ubash3a	ubiquitin associated and SH3 domain containing, A	785 bp upstream