rs387254358 SNP Detail

Summary

• ID
  rs387254358
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  138
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:32305615 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GAAGG AAGGAAGGAA GGAAGGGAGG
  R
  AGGGAGGGAG GGAGAAAGGG AGAAA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	B10.RIII-H2 H2-T18/(71NS)SnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C58/J	CZECHII/EiJ	KK/HlJ	PWK/PhJ	WSB/EiJ
ss923116067	MGP_WTSI_16_32486797	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	A	G	A	G
SNP Consensus Information
SNP					Consensus Type	B10.RIII-H2 H2-T18/(71NS)SnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C58/J	CZECHII/EiJ	KK/HlJ	PWK/PhJ	WSB/EiJ
rs387254358					SNP	G	G	G	G	G	G	A	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss923116067	MGP_WTSI_16_32486797	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:32305615 () rs orientation: forward

Symbol	Name	Function Class
Gm59898	predicted gene, 59898	1262 bp upstream
Rr514710	regulatory region 514710	1244 bp distal
Rr514711	regulatory region 514711	335 bp proximal
Rr514712	regulatory region 514712	1072 bp proximal
Rr514713	regulatory region 514713	1273 bp proximal
Rr514714	regulatory region 514714	1974 bp proximal
Slc51a	solute carrier family 51, alpha subunit	within coordinates
Tssr4846	transcription start site region 4846	799 bp downstream
Tssr4847	transcription start site region 4847	818 bp downstream
Tssr137989	transcription start site region 137989	1296 bp upstream
Tssr140806	transcription start site region 140806	622 bp upstream
Tssr140807	transcription start site region 140807	355 bp downstream
Tssr140808	transcription start site region 140808	371 bp downstream
Tssr140809	transcription start site region 140809	398 bp downstream
Tssr140810	transcription start site region 140810	428 bp downstream
Tssr140811	transcription start site region 140811	846 bp downstream
Tssr140812	transcription start site region 140812	870 bp downstream
Tssr140813	transcription start site region 140813	1012 bp downstream
Tssr140814	transcription start site region 140814	1076 bp downstream
Tssr140815	transcription start site region 140815	1100 bp downstream