rs38725476 SNP Detail

Summary

• ID
  rs38725476
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:59996677 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGACACATA AAACAAAATA
  AAGCAATCTG AAAACAGATG CTAAAAAAGG CTCACTTGGA GCTCTTCATT AGAATTTCCT
  GAAAATGTTG CTGTTCTGGG GCCTCCGTTG TCCTTAACTA TTTTATACCA TTAAGATTGA
  TAAAATTATG AAAGTAAAAT AGAATGGAGA GAGAGAGAGC GAGAGAGCAA GAGGGAGTGA
  R
  AGAGATTTAA AATATGTTAG GAAGAAAAAG CTTTCACCCA TGAATAACGC ATAAGACCAA
  TGCTGCACTG GGGTGAGGTA AGGAGACATG GATCTGTCTA AAGGAGTCAA CTGGCTTCCA
  GATTCAAGGC ATCGATGCCT CTGAGTTATT TTTACTGGTA GAGACTCCAG TTTGTGAGTA
  ACATGTGAGC CAGGATCAGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss52023979	NES15040319	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs38725476					SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52023979	NES15040319	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:59996677 () rs orientation: forward

Symbol	Name	Function Class
Rr196116	regulatory region 196116	877 bp distal
Rr204367	regulatory region 204367	920 bp distal
Rr209877	regulatory region 209877	125 bp proximal
Thsd4	thrombospondin, type I, domain containing 4	within coordinates