rs38726424 SNP Detail

Summary

• ID
  rs38726424
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:42270131 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTTTACTCA CTGTTACAAA
  CCTAGAGCCC TACCCAGGCC CTGTTGCAGA ACAGGGGCTC AGCCAATAGC TGTTGAATGA
  ATGAACGCCA CGGAAAGCCT TCTTACCCTG AGTTTGCTCT CAGCAGTTAG GGAGCCTTGA
  ACTTCTTTCT TTGACTCCCC TGACATTCCC ACCAGATAGG ATGAAATGGC ACTGCCAGAC
  Y
  CCGTGGCCTG AAACTCAACC GGGGGTGGGG GGGGGGGAGG GATCAGGCAT CCTCTGGAGT
  TGGCCGTCAC ACTTGGTGTC CTTGGCAGGC TGTCTCGCTG GTTTTTATTT TTATTTTTTC
  CTACTCCCAT TTCTCATGCT GACATGTGTG GCCAGTCAAT GGAGCTCGCT ATCTTGTCAT
  TTCCTACTGC TCTGCGCTGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50818795	NES13546172	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38726424					SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50818795	NES13546172	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:42270131 () rs orientation: forward

Symbol	Name	Function Class
Crtac1	cartilage acidic protein 1	1343 bp downstream
Gm34347	predicted gene, 34347	within coordinates
Mir3085	microRNA 3085	1522 bp upstream