rs38728391 SNP Detail

Summary

• ID
  rs38728391
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:68291551 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTATAGTATA GAAGTTGTGG
  GTTTGTATGA TTGACATGTT TAGGTTAGAT GGTGAAGGCA TTGGGAAATA TTTCAAATAT
  TCAGACATCC TTGAACTAAA GCACTAAATA TTAATTATGT AAGTTCTTCC AGCTGGAATA
  CCTTTGGTTT TCTTTAGGTA TTGAGAGTAT AGTGTAATAT AGTATGGCTT CTGACTTATC
  R
  ATTGGTGCCA CATTACAAAA AAAGTCTGTC CCACTTCATA AGAGATTTTT TTCTACTTCT
  ATCATGTTTA ATGTTCCAAA TAGATTTTAA AAACTGGTTG AGTGCATATT ACTTTTAGCT
  TCAGAAGATA ACATGTATAT TTAAGAGGCA TTTAACTATT ATAAATTATT TTGATGACTT
  AAAAAATGTC AATACTGGGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50462218	NES13447165	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38728391					SNP	A	A	A	A	A	A	A	A	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50462218	NES13447165	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:68291551 () rs orientation: forward

Symbol	Name	Function Class
Ldlrad4	low density lipoprotein receptor class A domain containing 4	within coordinates
Rr393849	regulatory region 393849	98 bp downstream
Rr540015	regulatory region 540015	452 bp distal
Rr540016	regulatory region 540016	1359 bp proximal
Tssr151775	transcription start site region 151775	1706 bp upstream