rs38729123 SNP Detail

Summary

• ID
  rs38729123
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:113370594 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGCTT GCTCCTTGGT CTCTGCCTCT
  K
  AAGATTTTCC AGATGTTCAT GATCC                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss51841803	NES14761165	PERLEGEN	MM_PANEL2	f	SNP	T	T	G	T	G	G	G	G	G	T		G	G	G	G		T
ss321910745	CHEV_6_113343627	CHEVERUD	SCREENING_POP	f	SNP											G					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs38729123					SNP	T	T	G	T	G	G	G	G	G	T	G	G	G	G	G	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51841803	NES14761165	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:113370594 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17842	CpG island 17842	511 bp distal
Rr636505	regulatory region 636505	1126 bp distal
Tssr58208	transcription start site region 58208	1149 bp downstream
Tssr58209	transcription start site region 58209	1116 bp downstream
Tssr58210	transcription start site region 58210	551 bp downstream
Ttll3	tubulin tyrosine ligase-like family, member 3	within coordinates