rs387358890 SNP Detail

Summary

• ID
  rs387358890
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  138
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:158225196 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTTTC TTTCTTTCTT TCTTTCTTTC
  Y
  TTCCTTCCTT CCTTCCTTCC TTCCT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	CBA/J	CZECHII/EiJ	DBA/1J	DBA/2J	I/LnJ	JF1/MsJ	KK/HlJ	LP/J	MA/MyJ	MOLF/EiJ	NON/ShiLtJ	NZB/BlNJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss915780440	MGP_WTSI_2_158383276	EVA_MGPV3	EVA_MGPV3	f	SNP	C	T	C	C	C	C	T	T	T	T	T	T	C	T	T	T	T	T	T	C	T	T	C	T	C	T	T	T	C	T	C	T	T	T	C	C	T
SNP Consensus Information
SNP					Consensus Type	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	CBA/J	CZECHII/EiJ	DBA/1J	DBA/2J	I/LnJ	JF1/MsJ	KK/HlJ	LP/J	MA/MyJ	MOLF/EiJ	NON/ShiLtJ	NZB/BlNJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs387358890					SNP	C	T	C	C	C	C	T	T	T	T	T	T	C	T	T	T	T	T	T	C	T	T	C	T	C	T	T	T	C	T	C	T	T	T	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss915780440	MGP_WTSI_2_158383276	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:158225196 () rs orientation: forward

Symbol	Name	Function Class
Snhg11	small nucleolar RNA host gene 11	within coordinates
Tssr21317	transcription start site region 21317	1878 bp downstream
Tssr21318	transcription start site region 21318	1102 bp downstream
Tssr21319	transcription start site region 21319	688 bp downstream
Tssr21320	transcription start site region 21320	652 bp downstream
Tssr21321	transcription start site region 21321	542 bp downstream
Tssr21322	transcription start site region 21322	419 bp downstream
Tssr21323	transcription start site region 21323	375 bp downstream
Tssr21324	transcription start site region 21324	337 bp downstream
Tssr21325	transcription start site region 21325	301 bp downstream
Tssr21326	transcription start site region 21326	277 bp downstream
Tssr21327	transcription start site region 21327	240 bp downstream
Tssr21328	transcription start site region 21328	194 bp downstream
Tssr21329	transcription start site region 21329	181 bp downstream
Tssr21330	transcription start site region 21330	92 bp downstream
Tssr21331	transcription start site region 21331	405 bp upstream
Tssr21332	transcription start site region 21332	542 bp upstream
Tssr21333	transcription start site region 21333	574 bp upstream
Tssr21334	transcription start site region 21334	1341 bp upstream
Tssr21335	transcription start site region 21335	1697 bp upstream
Tssr21336	transcription start site region 21336	1751 bp upstream
Tssr21337	transcription start site region 21337	1855 bp upstream
Tssr27228	transcription start site region 27228	58 bp upstream