rs387360650 SNP Detail

Summary

• ID
  rs387360650
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  138
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:15079002 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTTTA TTCATAAGAA ATAGAATTTT
  W
  AAAAAAAAGG TTTTAAAAGT TCAAT                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cJ	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57L/J	CBA/J	DBA/1J	JF1/MsJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZO/HlLtJ	SEA/GnJ	SM/J	SPRET/EiJ	ST/bJ	WSB/EiJ
ss917236548	MGP_WTSI_5_15028988	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	T	T	A	A	A	A	A	A	A	A	T
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cJ	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57L/J	CBA/J	DBA/1J	JF1/MsJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZO/HlLtJ	SEA/GnJ	SM/J	SPRET/EiJ	ST/bJ	WSB/EiJ
rs387360650					SNP	A	A	A	A	A	A	A	A	A	A	T	T	A	A	A	A	A	A	A	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss917236548	MGP_WTSI_5_15028988	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:15079002 () rs orientation: forward

Symbol	Name	Function Class
D5Mit103b	DNA segment, Chr 5, Massachusetts Institute of Technology 103b	1468 bp distal
Gm17019	predicted gene 17019	within coordinates
Gm71745	predicted gene, 71745	within coordinates
Rr111907	regulatory region 111907	199 bp proximal
Rr121523	regulatory region 121523	667 bp distal
Rr121525	regulatory region 121525	298 bp proximal
Rr121527	regulatory region 121527	1114 bp proximal
Rr121528	regulatory region 121528	1589 bp proximal
Rr128307	regulatory region 128307	1102 bp distal