rs387376967 SNP Detail

Summary

• ID
  rs387376967
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  138
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:149762099 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATATA TAATATATAA TATATAATAT
  R
  TAATATATAA TATATAATAT ATAAT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	BALB/cByJ	BTBR T<+> Itpr3/J	BUB/BnJ	C57BL/6J	C57BL/10J	C57BR/cdJ	C58/J	CZECHII/EiJ	DBA/1J	FVB/NJ	I/LnJ	NZB/BlNJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	ZALENDE/EiJ
ss640670011	FVB_NJ_4_149051751	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	G	A	G	G	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	BALB/cByJ	BTBR T<+> Itpr3/J	BUB/BnJ	C57BL/6J	C57BL/10J	C57BR/cdJ	C58/J	CZECHII/EiJ	DBA/1J	FVB/NJ	I/LnJ	NZB/BlNJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	ZALENDE/EiJ
rs387376967					SNP	A	A	A	A	A	A	A	G	A	G	G	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss640670011	FVB_NJ_4_149051751	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:149762099 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15330	CpG island 15330	1237 bp distal
Pik3cd	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit delta	within coordinates
Rr605004	regulatory region 605004	1609 bp distal
Rr605005	regulatory region 605005	1108 bp distal
Rr605006	regulatory region 605006	1555 bp proximal
Tssr44666	transcription start site region 44666	1577 bp upstream
Tssr44667	transcription start site region 44667	1518 bp upstream