rs38742897 SNP Detail

Summary

• ID
  rs38742897
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  126
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:131017680 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ACTCCTGTTG GTGGTCACAT TTGGCAGCCC GTCTCACTTA
  GTTTCTGATT TTTTTTTAAA TAACAACAGA TCTTAACATC TCCTTTGAGC GAACCCGTTT
  K
  CAGTTCATTT TTTTAATCTC TTTCTTTTCA CTCCTGTAAA AAGCCCAGCA CTTGAATTGT
  TCTTTCTTTA AATGTTCTGT GTTTGTATCT GTTTTTATTA                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	CAST/EiJ	FVB/NJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51634184	NES14648845	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	T	G
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	CAST/EiJ	FVB/NJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38742897					SNP	G	G	G	G	G	G	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51634184	NES14648845	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:131017680 () rs orientation: forward

Symbol	Name	Function Class
Lef1	lymphoid enhancer binding factor 1	within coordinates
Tssr31723	transcription start site region 31723	1238 bp downstream
Tssr31724	transcription start site region 31724	194 bp downstream
Tssr31725	transcription start site region 31725	80 bp downstream