rs387433169 SNP Detail

Summary

• ID
  rs387433169
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  138
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:105279016 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGGGA AGGAATGAAA AAGGAAGGAA
  K
  GAAGGAAGGA AGGAAGGGAG GGAGG                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	FVB/NJ	I/LnJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	WSB/EiJ
ss917606473	MGP_WTSI_5_105131150	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	G	G	T	T	T	T	T	T	T	G	T	T	T	G	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	G	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	FVB/NJ	I/LnJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	WSB/EiJ
rs387433169					SNP	T	T	T	T	T	T	G	G	T	T	T	T	T	T	T	G	T	T	T	G	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	G	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss917606473	MGP_WTSI_5_105131150	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:105279016 () rs orientation: forward

Symbol	Name	Function Class
Gbp4	guanylate binding protein 4	within coordinates
Tssr1571	transcription start site region 1571	622 bp downstream
Tssr52267	transcription start site region 52267	177 bp downstream
Tssr52268	transcription start site region 52268	222 bp downstream
Tssr52269	transcription start site region 52269	284 bp downstream
Tssr52270	transcription start site region 52270	465 bp downstream
Tssr52271	transcription start site region 52271	588 bp downstream
Tssr52272	transcription start site region 52272	647 bp downstream
Tssr52273	transcription start site region 52273	717 bp downstream
Tssr52274	transcription start site region 52274	745 bp downstream
Tssr52275	transcription start site region 52275	765 bp downstream
Tssr52276	transcription start site region 52276	794 bp downstream
Tssr52277	transcription start site region 52277	824 bp downstream
Tssr52278	transcription start site region 52278	846 bp downstream
Tssr52279	transcription start site region 52279	912 bp downstream
Tssr52280	transcription start site region 52280	961 bp downstream
Tssr52281	transcription start site region 52281	991 bp downstream
Tssr52282	transcription start site region 52282	1021 bp downstream
Tssr52283	transcription start site region 52283	1099 bp downstream
Tssr52284	transcription start site region 52284	1158 bp downstream
Tssr52285	transcription start site region 52285	1192 bp downstream
Tssr52286	transcription start site region 52286	1205 bp downstream
Tssr52287	transcription start site region 52287	1234 bp downstream
Tssr52288	transcription start site region 52288	1251 bp downstream
Tssr52289	transcription start site region 52289	1331 bp downstream
Tssr52290	transcription start site region 52290	1438 bp downstream
Tssr52291	transcription start site region 52291	1778 bp downstream