rs38744121 SNP Detail

Summary

• ID
  rs38744121
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  126
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:113282730 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTTGCTGTAT GGCTCAGCCT GACCTGGAAC TCATAAGCAG
  TTGGAGCAAT CCTAATTCAA TCCTCTTGAG TGCTGCGATT ACTGGTTTAT TCTGAATTTT
  M
  TGGATGAGTA TAATAGCTTG TATTTTCTTT GTGCATGCGA ATCTTATACA ACAGACACTG
  TATTAGGCAA TTTACAGTCT TCAACTCTCT TAATCCTTAT                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51842528	NES14762355	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	A	C	C	A	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38744121					SNP	C	C	C	C	C	C	A	C	C	A	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51842528	NES14762355	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:113282730 () rs orientation: forward

Symbol	Name	Function Class
Brpf1	bromodomain and PHD finger containing, 1	1368 bp upstream
Cpgi17838	CpG island 17838	547 bp proximal
Cpne9	copine family member IX	198 bp downstream
Gm15492	predicted gene 15492	within coordinates
Gm43935	predicted gene, 43935	within coordinates
Gm67816	predicted gene, 67816	within coordinates
Rr399829	regulatory region 399829	603 bp upstream
Rr636483	regulatory region 636483	123 bp distal
Rr636484	regulatory region 636484	878 bp proximal
Rr636485	regulatory region 636485	1671 bp proximal
Tssr58189	transcription start site region 58189	1181 bp upstream
Tssr58190	transcription start site region 58190	1391 bp upstream
Tssr58191	transcription start site region 58191	1470 bp upstream
Tssr62434	transcription start site region 62434	1998 bp downstream