rs387443572 SNP Detail

Summary

• ID
  rs387443572
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  138
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr12:74059011 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCCCT CCCTGCCTGC CTCCCTCCCT
  C
  CCTCCCTCCC TCCCTCCCTC CCTCC                                      
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CZECHII/EiJ	LG/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	QSi5/Ianm	RIIIS/J	SJL/J	SM/J	SPRET/EiJ
ss921417502	MGP_WTSI_12_74012237	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CZECHII/EiJ	LG/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	QSi5/Ianm	RIIIS/J	SJL/J	SM/J	SPRET/EiJ
rs387443572					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss921417502	MGP_WTSI_12_74012237	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:74059011 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr467891	regulatory region 467891			1180 bp distal
Rr467892	regulatory region 467892			1388 bp proximal
Syt16	synaptotagmin XVI			Intron
				Noncoding-Transcript-Variant