rs38745497 SNP Detail

Summary

• ID
  rs38745497
• Variation Type
  SNP
• Alleles
  A/C/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:48530952 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    AGACTCAGG CTGGTCCATC ACATGGAGAA
  GTTCAAGGGA GATCAAATGG ATACCGGGCA CCATTTGACG GATTAGAAAA GCTAGGTCAC
  CACTGGCCTG CAGCCTAGCA CACTGAACGT CATCAAACAC GTATTCATTA AGGACTTTGC
  V
  CTGTGATACA GTGCAAAGAT GTGAACAACA ACAAAACTGT GCCTATACTT AGCCAGCCCA
  GGCTGGAAGG GTGTGGACTG AACTGGGATT GCTTTGTCTG AGTGCACAGA AAGCATCAGG
  AGATGGAAAA CCCTCCCAAT GTAGACATTT                                 
  
  V = A/C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss51307139	NES13774487	PERLEGEN	MM_PANEL2	f	SNP	A	C	A	A	A	A	A	A	A		A	C	A	A		A
ss321793661	CHEV_6_48504017	CHEVERUD	SCREENING_POP	f	SNP										G					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs38745497					SNP	A	C	A	A	A	A	A	A	A	G	A	C	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51307139	NES13774487	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:48530952 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17370	CpG island 17370	439 bp proximal
Gm67220	predicted gene, 67220	within coordinates
Gm67227	predicted gene, 67227	within coordinates
Lrrc61	leucine rich repeat containing 61	780 bp upstream
Rr399635	regulatory region 399635	500 bp upstream
Rr629686	regulatory region 629686	800 bp distal
Rr629687	regulatory region 629687	within coordinates
Rr629688	regulatory region 629688	745 bp proximal
Rr629689	regulatory region 629689	798 bp proximal
Tssr56137	transcription start site region 56137	758 bp upstream
Tssr56138	transcription start site region 56138	912 bp upstream
Tssr60734	transcription start site region 60734	639 bp downstream
Tssr60735	transcription start site region 60735	656 bp downstream
Tssr60736	transcription start site region 60736	699 bp downstream