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rs387455707 SNP Detail
Summary
  • ID
    rs387455707
  • Variation Type
    SNP
  • Alleles
    A/T
Genome Location and Flanking Sequence
  • Location
    Chr19:11798574 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                          ACCGG AGTTCAATTC CCAGAACTTA
    W
    AATAATAATA ATAATAATAA TAATG                                      
    
    W = A/T
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129P2/OlaHsd
129S1/SvImJ
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CZECHII/EiJ
DBA/1J
DBA/2J
I/LnJ
KK/HlJ
LEWES/EiJ
LP/J
MA/MyJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
ST/bJ
SWR/J
WSB/EiJ
ss924161839 MGP_WTSI_19_11821210 EVA_MGPV3 EVA_MGPV3 f SNP T T T T A A T T T T T T T T T T T T A T T A A T T T A T T T A T T T A A T A A T
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CZECHII/EiJ
DBA/1J
DBA/2J
I/LnJ
KK/HlJ
LEWES/EiJ
LP/J
MA/MyJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
ST/bJ
SWR/J
WSB/EiJ
rs387455707 SNP T T T T A A T T T T T T T T T T T T A T T A A T T T A T T T A T T T A A T A A T
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss924161839 MGP_WTSI_19_11821210 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP A/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr19:11798574 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Cpgi10634 CpG island 10634 1814 bp distal
Cpgi10635 CpG island 10635 1066 bp distal
Gm41810 predicted gene, 41810 86 bp downstream
Gm59062 predicted gene, 59062 within coordinates
Rr544384 regulatory region 544384 1778 bp distal
Rr544385 regulatory region 544385 1152 bp distal
Rr544386 regulatory region 544386 671 bp distal
Rr544387 regulatory region 544387 734 bp distal
Stx3 syntaxin 3 mRNA-UTR
Noncoding-Transcript-Variant
Tssr155287 transcription start site region 155287 271 bp upstream
Tssr155288 transcription start site region 155288 612 bp upstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
03/18/2025
MGI 6.24
The Jackson Laboratory